{
  "_id": "6a14208dacfb0bcc41d3e5c9",
  "Package": "SCIBER",
  "Type": "Package",
  "Title": "Single-Cell Integrator and Batch Effect Remover",
  "Version": "0.2.1",
  "Authors@R": "c(person(given = \"Dailin\", family = \"Gan\", role = c(\"aut\", \"cre\"), email = \"dgan@nd.edu\", comment = c(ORCID = \"0000-0003-0535-1259\")), person(given = \"Jun\", family = \"Li\", role = \"aut\"))",
  "Description": "Remove batch effects by projecting query batches into the\nreference batch space.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.1",
  "LazyData": "true",
  "URL": "https://github.com/RavenGan/SCIBER",
  "BugReports": "https://github.com/RavenGan/SCIBER/issues",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "Repository": "https://ravengan.r-universe.dev",
  "Date/Publication": "2023-05-02 01:25:16 UTC",
  "RemoteUrl": "https://github.com/ravengan/sciber",
  "RemoteRef": "HEAD",
  "RemoteSha": "372e4117a554031a8b7fc21afe6ae2fb38294d92",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-25 10:09:18 UTC",
    "User": "root"
  },
  "Author": "Dailin Gan [aut, cre] (ORCID: <https://orcid.org/0000-0003-0535-1259>),\nJun Li [aut]",
  "Maintainer": "Dailin Gan <dgan@nd.edu>",
  "MD5sum": "598ff084f97a75d54c969389f7bec5f6",
  "_user": "ravengan",
  "_type": "src",
  "_file": "SCIBER_0.2.1.tar.gz",
  "_fileid": "0ec0e69eb02632b0bf35cc249553851e86650c885f00b732261aa81d394d2a00",
  "_filesize": 742874,
  "_sha256": "0ec0e69eb02632b0bf35cc249553851e86650c885f00b732261aa81d394d2a00",
  "_created": "2026-05-25T10:09:18.000Z",
  "_published": "2026-05-25T10:12:29.852Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77693885524,
      "time": 144,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7196158129"
    },
    {
      "job": 77693885518,
      "time": 137,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7196156270"
    },
    {
      "job": 77693885616,
      "time": 137,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7196151058"
    },
    {
      "job": 77693885550,
      "time": 163,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7196155138"
    },
    {
      "job": 77693448395,
      "time": 207,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7196121889"
    },
    {
      "job": 77693885564,
      "time": 119,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7196151968"
    },
    {
      "job": 77693885534,
      "time": 131,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7196155027"
    },
    {
      "job": 77693885525,
      "time": 89,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7196144425"
    },
    {
      "job": 77693885526,
      "time": 139,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7196156522"
    }
  ],
  "_buildurl": "https://github.com/r-universe/ravengan/actions/runs/26394979658",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/ravengan/sciber",
  "_commit": {
    "id": "372e4117a554031a8b7fc21afe6ae2fb38294d92",
    "author": "RavenGan <dailin.raven.gan@gmail.com>",
    "committer": "RavenGan <dailin.raven.gan@gmail.com>",
    "message": "Edit main fcn\n",
    "time": 1682990716
  },
  "_maintainer": {
    "name": "Dailin Gan",
    "email": "dgan@nd.edu",
    "login": "ravengan",
    "description": "",
    "uuid": 46891773,
    "orcid": "0000-0003-0535-1259"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "cowplot",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "ggthemes",
      "role": "Suggests"
    },
    {
      "package": "Matrix",
      "role": "Suggests"
    },
    {
      "package": "uwot",
      "role": "Suggests"
    }
  ],
  "_owner": "ravengan",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 4,
  "_contributors": [
    {
      "user": "ravengan",
      "count": 52,
      "uuid": 46891773
    }
  ],
  "_userbio": {
    "uuid": 46891773,
    "type": "user",
    "name": "RavenGan"
  },
  "_downloads": {
    "count": 185,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SCIBER"
  },
  "_devurl": "https://github.com/ravengan/sciber",
  "_searchresults": 8,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/SCIBER.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/ravengan/sciber",
  "_realowner": "ravengan",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.1",
      "date": "2022-04-28"
    },
    {
      "version": "0.1.2",
      "date": "2022-06-22"
    },
    {
      "version": "0.1.3",
      "date": "2022-07-06"
    },
    {
      "version": "0.1.4",
      "date": "2022-07-14"
    },
    {
      "version": "0.1.5",
      "date": "2022-07-17"
    },
    {
      "version": "0.1.6",
      "date": "2023-02-09"
    },
    {
      "version": "0.2.2",
      "date": "2023-05-02"
    }
  ],
  "_exports": [
    "SCIBER"
  ],
  "_datasets": [
    {
      "name": "HumanDC",
      "title": "Human dendritic cell gene expression and meta data",
      "object": "HumanDC",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "HumanDC",
      "title": "Human dendritic cell gene expression and meta data",
      "topics": [
        "HumanDC"
      ]
    },
    {
      "page": "SCIBER",
      "title": "Batch effect removal with SCIBER",
      "topics": [
        "SCIBER"
      ]
    }
  ],
  "_readme": "https://github.com/ravengan/sciber/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "dplyr",
    "generics",
    "glue",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "R6",
    "rlang",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "my-vignette.Rmd",
      "filename": "my-vignette.html",
      "title": "Quick start to SCIBER",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Removing batch effects in Human dendritic cells.",
        "Session Info"
      ],
      "created": "2022-07-06 15:42:25",
      "modified": "2023-05-02 00:59:58",
      "commits": 2
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "sciber",
  "_universes": [
    "ravengan"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.1",
      "date": "2026-05-25T10:11:38.000Z",
      "distro": "noble",
      "commit": "372e4117a554031a8b7fc21afe6ae2fb38294d92",
      "fileid": "45431372d304d0af98d307a21abeec5af222821e4f52052c3c1311f198abc527",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ravengan/actions/runs/26394979658"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.2.1",
      "date": "2026-05-25T10:11:32.000Z",
      "distro": "noble",
      "commit": "372e4117a554031a8b7fc21afe6ae2fb38294d92",
      "fileid": "3a92cd925394721b0995e94e055074a23b5e7bc3b095fd57d2ebab94cf6fd061",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ravengan/actions/runs/26394979658"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.1",
      "date": "2026-05-25T10:11:16.000Z",
      "commit": "372e4117a554031a8b7fc21afe6ae2fb38294d92",
      "fileid": "0e86831632c23d5fc6e2587132ab0f2d5a51a516cb2a63841c71d084cfccd7bd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ravengan/actions/runs/26394979658"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.2.1",
      "date": "2026-05-25T10:11:25.000Z",
      "commit": "372e4117a554031a8b7fc21afe6ae2fb38294d92",
      "fileid": "9e4978bcd7659f509b419e76d645a9b182989caf80128e868619b9242b7d621b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ravengan/actions/runs/26394979658"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.1",
      "date": "2026-05-25T10:11:33.000Z",
      "commit": "372e4117a554031a8b7fc21afe6ae2fb38294d92",
      "fileid": "010c9a741e0138e43073b0a1a231a64696ef74074b89adc154796100852151e2",
      "status": "success",
      "buildurl": "https://github.com/r-universe/ravengan/actions/runs/26394979658"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.1",
      "date": "2026-05-25T10:11:24.000Z",
      "commit": "372e4117a554031a8b7fc21afe6ae2fb38294d92",
      "fileid": "1d237e2483dccaec09d8f1d8a771420d8f8c4ca070907eab37aca9e9ff8f5960",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ravengan/actions/runs/26394979658"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.1",
      "date": "2026-05-25T10:10:40.000Z",
      "commit": "372e4117a554031a8b7fc21afe6ae2fb38294d92",
      "fileid": "d5755885e415c078d53c4a8ab9d0099beaba731f78d4b2a6a84b1bf9db30fea1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ravengan/actions/runs/26394979658"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.2.1",
      "date": "2026-05-25T10:11:29.000Z",
      "commit": "372e4117a554031a8b7fc21afe6ae2fb38294d92",
      "fileid": "9e020bd5eb6bfce0f2442941aad6206655c48bf58eaa5f3b43868d6590641072",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ravengan/actions/runs/26394979658"
    }
  ]
}